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Contents
Getting Started
About
Installing
Introductory Tutorials
Software Packages
BEAUti, BEAST and other programs
BEAGLE Library
Tracer
FigTree
TempEst
SPREAD4
spread.gl
PiBUSS
BEASTGen
Tutorials
First Tutorial
Second Tutorial
Rates and Dates
Temporal Signal using TempEst
Bayesian Evaluation of Temporal Signal
Online phylodynamic inference
Phylodynamics of an epidemic
Phylodynamics of seasonal influenza
Analysing Continuous Traits
Analysing Continuous Traits without Sequence Data
How-To Guides
Constructing a model in BEAUti
Creating taxon sets
Creating fixed local clocks
Using an empirical tree distribution
Specify sampling dates
Tip date sampling
Analysing BEAST output
Convergence diagnostics in Tracer
Create custom substitution models
Create Markov-modulated models
Advanced Tutorials
Hierarchical Phylogenetic Model Tutorial
Markov Jumps and Rewards Tutorial
Adaptive MCMC Tutorial
Model Selection Tutorial
Model Selection Advanced Tutorial
Model Selection Examples
Clock Model Averaging Tutorial
Epoch Model Tutorial
Time-Dependent Rate Model Tutorial
Phylogeography with individual travel history
Analysing datasets with tens of thousands of taxa
Workshop Tutorials
Estimating Rates and Dates
Evolutionary Dynamics of Influenza
Phylodynamics inference of respiratory viruses
Model Selection and Testing
Phylogeographic Diffusion in Discrete Space
Phylogeographic Diffusion in Continuous Space, YFV
Phylogeographic Diffusion in Continuous Space, WNV
Genomic epidemiology
Visualizing phylogenetic trees using FigTree
Reference
Effective Sample Size
Optimizing Performance
Molecular Clocks
Tree Priors
Parameter Priors
Summarizing trees
XML Reference
Help
FAQ
Error Messages
Topics
Glossary
TreeStat
Warning:
This page is incomplete.
User-interface
This is a utility program that will parse through a set of trees and extract statistics and information from them.
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