This page lists software packages that are no longer actively developed or supported. They are documented here for reference and for users who may need them for reproducing older analyses.
Tree visualisation
Phylogeographic visualisation
- Contents
- Getting Started
- Software Packages
-
Tutorials
- First Tutorial
- Second Tutorial
- Rates and Dates
- Visualizing Trees using PearTree
- Temporal Signal using TempEst
- Bayesian Evaluation of Temporal Signal
- Online phylodynamic inference
- Phylodynamics of an epidemic
- Phylodynamics of seasonal influenza
- Analysing Continuous Traits
- Analysing Continuous Traits without Sequence Data
- How-To Guides
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Advanced Tutorials
- Hierarchical Phylogenetic Model Tutorial
- Markov Jumps and Rewards Tutorial
- Adjusted Bayes Factor Tutorial
- Adaptive MCMC Tutorial
- Model Selection Tutorial
- Model Selection Advanced Tutorial
- Model Selection Examples
- Clock Model Averaging Tutorial
- Epoch Model Tutorial
- Time-Dependent Rate Model Tutorial
- Phylogeography with individual travel history
- Analysing datasets with tens of thousands of taxa
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Workshop Tutorials
- Estimating Rates and Dates
- Evolutionary Dynamics of Influenza
- Phylodynamics inference of respiratory viruses
- Model Selection and Testing
- Phylogeographic Diffusion in Discrete Space
- Phylogeographic Diffusion in Continuous Space, YFV
- Phylogeographic Diffusion in Continuous Space, WNV
- Genomic epidemiology
- Reference
- Help
Older and Unsupported Software