The following pages and posts are tagged with
| Title | Type | Excerpt |
|---|---|---|
| WNV alignment unique site patterns | Page | Unique site patterns and counts for WNV.fasta count pattern 2821 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 2635 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2025 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1963 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC 60 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA 56 <code class="language-plaintext... |
| Some notes on pattern compression and speeding up BEAST analysis | Post | Pattern compression for fun and profit by Andrew Rambaut & Philippe Lemey To calculate the likelihood of a tree given a sequence alignment, the log likelihood of each site (column in the alignment) is evaluated independently and then summed across all sites in the alignment. The likelihood of any... |
| BEAST X (v10.5.0-beta5) released | Post | We are pleased to announce the release of BEAST X (v10.5.0-beta5) <div style="font-size:... |
| BEAST v1.10.4 released | Post | We are pleased to announce the release of BEAST v1.10.4 BEAST v1.10.4 fixes a bug when trying to specify a burnin on the command line version of LogCombiner. It also introduces two new command line options specific to BEAGLE v3.1 (-beagle_threading_off and -beagle_thread_count). Download BEAST v1.10.4... |
| BEAST v1.10.3 released | Post | We are pleased to announce the release of BEAST v1.10.3 BEAST v1.10.3 fixes an important bug where performance was degraded when using BEAGLE 3 on CPUs (compared with using BEAGLE 2 or using GPUs). Download BEAST v1.10.3 binaries for Mac, Windows and UNIX/Linux |
| BEAST v1.10.0 released | Post | We are pleased to announce the release of BEAST v1.10 BEAST v1.10.0 is a major new version with many new features which focus on flexibility of model specification, integration of different data sources, and increasing the speed and efficiency of sampling. The new version coincides with the... |
| BEAST v1.8.4 released | Post | BEAST v1.8.4 has been released: Download BEAST v1.8.4 binaries for Mac, Windows and UNIX/Linux Version 1.8.4 released 17th June 2016 New Features: New structured list of citations printed to screen before running. Option ('-citation_file') to write citation list to file. Option in BEAUti Priors panel... |